PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009840.2.1
Common NameLOC101265920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 436aa    MW: 48990.1 Da    PI: 4.6254
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009840.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.41.4e-32561951128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                         lp+G++F+Ptd+e++  +L  kveg +      +++  +i++v+    i++++P++Lp  vk++    +fF+++ k+y+tg+rk+r+++  
  Solyc05g009840.2.1  56 LPRGVKFDPTDQEII-WHLIGKVEGGDrnshpfIDE--FIPTVNeddgICYTHPQNLP-GVKQDGCVAHFFHRAIKAYNTGTRKRRKIHgd 142
                         799************.78999999998676544222..3444422335**********.666777788******************85545 PP

                 NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tg++k+v+  +g + g+kk++v+y    +  k+ekt+Wvmh+y+l
  Solyc05g009840.2.1 143 nsgDVRWHKTGRTKPVIL-DGIQRGCKKIMVLYisPSKGGKAEKTNWVMHQYHL 195
                         544778************.99************6534677788*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3942214IPR003441NAC domain
PROSITE profilePS5100530.93956214IPR003441NAC domain
PfamPF023653.9E-1457195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MARPSWLVDS RRIATKIKSA SGDPATVNWK SNPTKACPNC QFIIDNNDVS HDWPGLPRGV  60
KFDPTDQEII WHLIGKVEGG DRNSHPFIDE FIPTVNEDDG ICYTHPQNLP GVKQDGCVAH  120
FFHRAIKAYN TGTRKRRKIH GDNSGDVRWH KTGRTKPVIL DGIQRGCKKI MVLYISPSKG  180
GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQVKQ GEKIEQEFPE DSECMVAKVD  240
PHTPKSVTPE PPRSDRLSSS MDARQQIAAA SPVNQYHEVE DYVEDDMGAL PEQPEDQDQN  300
IENQIDETGT KIETETGDDP KWWDSESQYL LDSQQLVEGL SLCDDLLASQ SPNRDGNEND  360
QVQKCRPSLA DYARLGPEDL KKDLEECQQF VADPANIEIG TPPDFRLSQL EFGSQDSYIA  420
WGGNKYGFDS AEQNG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.150560.0callus| cell culture| fruit| leaf| trichome
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238966.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-178NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK4BXF80.0K4BXF8_SOLLC; Uncharacterized protein
STRINGSolyc05g009840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81622430
Representative plantOGRP82641016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-180NAC family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]